My hate for you
Since Rhys had ripped Jack out of his brain, he had never thought he would miss the man more than he hated him.
When he returned to Helios, the first thing he did was make sure that the chips weren't damaged and gave them to people who knew what they were doing.
Sure, Rhys knew that they were giving Jack his body back, and he knew Jack would keep his memories, and he knew Jack would kill him for what he did. He still missed the man.
But what happened when he finally met the guy was not what he was expecting. Or actually no, first reaction was very much expected. But later on? Rhys wonders where Jack had gone... because this was surely not him...